WebGL accelerated JavaScript molecular graphics library

2D and 3D molecular visualization in Jupyter notebooks using 3DMol.js and D3.js

3D molecular visualization React component using 3Dmol.js

A VSCode extension to visualize 3D molecules from .xyz and .trj using 3Dmol.js

3D visualization of chemicals using 3DMol.js.

Molecular structure visualizations with 3Dmol.js in Power BI

Code to allow visualization and 3D manipulation of specific proteins and other other biomolecules in a web page (using 3DMol.js)

Small wrapper around 3dmol.js and html2canvas for creating self-contained HTML files that display a 3D molecular representation.

Protein Viewer is a web-based tool to visualize 3D protein structures using PDB IDs. It fetches data from the RCSB Protein Data Bank and renders models with 3Dmol.js. Designed with a clean, scrollable UI and dark theme for ease of use.

study 3dmol.js

py3Dmol-using 3Dmol.js in python

PL: Interaktywna wizualizacja struktur makromolekuł 3D sterowana gestami dłoni przy użyciu MediaPipe i 3Dmol.js. ||| EN: Interactive 3D macromolecules structure visualization controlled by hand gestures using MediaPipe and 3Dmol.js.

A compound structure visualizer written in Python with PySide6, using 3dmol.js as the viewer.

Simple addon for Wordpress to add a interactive protein or molecule visualisation using 3Dmol.js

A web app that loads and renders multiple .xyz molecular models in interactive 3D using 3Dmol.js.

Week 18 Project 3: Protein sequence design via activation maximization with Gumbel-Softmax relaxation; a 1-D CNN discovers α-helix, β-sheet, and stability motifs through gradient ascent on amino acid sequences; features interactive 3Dmol.js ribbon diagrams, NeRF backbone building, and a 9-page Streamlit dashboard. Pure NumPy

Week 17 Project 2: From-scratch Bidirectional LSTM in NumPy for protein secondary structure prediction (Q3: Helix/Sheet/Coil); interactive 3D ribbon diagrams via NeRF backbone gen + 3Dmol.js, PDB file upload for exper struct comparison, cell state viz, & 7-page Streamlit dashboard; >70% Q3 acc on synth Chou-Fasman propensity-weighted training data

3dmol.js plugin for markdown-it.

Project - RDKit - 3Dmol.js Integration

Simple angular 4 app with 3Dmol.js in use

A 3D mof viewer. Built with 3Dmol.js (BSD 3-Clause). Source: https://3dmol.org.

A 3D adsorption viewer. Built with 3Dmol.js (BSD 3-Clause). Source: https://3dmol.org.

Molecular Alignment Viewer — FastAPI + RDKit backend, React + 3Dmol.js frontend

Render a 3Dmol.js viewer in a NextJS app

a fork of daveyloder's ChromoXplorer attempting to use 3dmol.js

A Sphinx extension for interactive 3D molecular visualization using 3Dmol.js.

A 3D aimd water simulation viewer. Built with 3Dmol.js (BSD 3-Clause). Source: https://3dmol.org.

Protein structure prediction web app inspired by AlphaFold 3. Flask + ESMFold + 3Dmol.js

A Livewire component for 3D molecular visualization using 3DMol.js

Rich interface for 3Dmol.js that includes an atom selection language