List of Computer Science courses with video lectures.

Data Apps & Dashboards for Python. No JavaScript Required.

A set of ready to use Agent Skills for research, science, engineering, analysis, finance and writing.

:microscope: Path to a free self-taught education in Bioinformatics!

Official git repository for Biopython (originally converted from CVS)

A curated list of awesome Bioinformatics libraries and software.

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

A DSL for data-driven computational pipelines

Making Protein folding accessible to all!

Single-cell analysis in Python. Scales to >100M cells.

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining

A versatile pairwise aligner for genomic and spliced nucleotide sequences

MMseqs2: ultra fast and sensitive search and clustering suite

Useful bash one-liners for bioinformatics.

A full spaCy pipeline and models for scientific/biomedical documents.

Official code repository for GATK versions 4 and up

Conda recipes for the bioconda channel.

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

Data intensive science for everyone.

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

Toolkit for processing sequences in FASTA/Q formats

Aggregate results from bioinformatics analyses across many samples into a single report.

A curated list of awesome AI tools, libraries, papers, datasets, and frameworks that accelerate scientific discovery — from physics and chemistry to biology, materials, and beyond.

resources for learning bioinformatics

Unix, R and python tools for genomics and data science

Therapeutics Commons (TDC): Multimodal Foundation for Therapeutic Science

Foldseek enables fast and sensitive comparisons of large structure sets.