Machine Learning models for in vitro enzyme kinetic parameter prediction

A generalized enzyme kinetics parameter prediction model.

A Python parser for the BRENDA database

Enzyme models that take into account kinetics, allostery and thermodynamics

Enzyme kinetics data extraction pipeline

🏍️ - JAX-based framework to model biological systems

Python toolkit and package for analyzing enzyme activity data

No description available

This is a simple framework for multiple reaction enzyme kinetics simulation

Source code for development of the Structure-oriented Kinetics Dataset (SKiD) of enzyme-substrate interactions

🔬 mtphandler is Python package for processing, enriching, and converting microtiter plate data into standardized EnzymeML time-course data, ready for data science

NSKinetics: Simulation of Non-Steady state enzyme kinetics including multiple inhibitory phenomena.

LBplot is a python program to plot Lineweaver-Burk double reciprocal plots and calculate basic statistics from V0 and [S] data.

Simluation of Michaelis Menten Reaction

Software for enzyme kinetics data fitting

Beaker Easily Analyzes the Kinetics of Enzyme Reactions

michaelis menten enzyme kinetics implemented in R Shiny app

Shiny application providing fun visualizations for a simple second order Michaelis-Menton enzyme kinetics model.

Organize and analyze plate-reader data from 96-well plate kinetics experiments. Specifically tailored for PGO assays but can be modified to fit many more.

A Python module for analysis and visualization of dose-response data

Implemented ML models (LR, SVM, K-Nearest Neighbours, Random Forest) in Python to predict binding affinities of chemical inhibitors of Cathepsin S enzyme from their 2D structural data (SMILES). A max model accuracy of 46% concluded that 2D structural data is insufficient to predict the complex kinetics of binding.

A QM-MM Tutorial of Enzyme Reaction Dynamics

This script calculates biochemical parameters of enzymes such as Km, kcat and Ki.

Advanced Enzyme Kinetics & Thermodynamics Suite

A package to simulate enzyme kinetics

A framework to model in vivo enzyme kinetics

A bayesian approach to (Michaelis-Menten) enzyme kinetics.

Simple python script to analyze enzyme kinetics data

Stochastic chemical kinetics using Gillespie algorithm and chemical master equation, application to enzyme kinetics

Web app for the analysis of enzyme kinetics data