A continually expanding collection of microbiome analysis tools

Some notes on microbiome analysis

:microscope: Resources and notes on studying the human microbiome

Notes and scripts for 16S microbiome analysis

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Notes for probabilistic unsupervised modeling of the microbiome

Notes/code associated with the 16S-archaea Vertebrate Gut Microbiome manuscript

Notes, R scripts, Notebooks, and other code related to shelf-life microbiome research projects. Available for data reproducibility and methods transparency.

My notes on the importance of dimensionality reduction in microbiome data. This repository contains experiments with different dimensionality reduction techniques (e.g., PCA, t-SNE, UMAP) applied to microbiome datasets to assess their impact on data visualization, clustering, and downstream classification tasks.