Hand-crafted radiomics and deep learning-based radiomcis features extraction.

Extracting Radiomic Features using CUDA for GPU-acceleration

Radoimics Toolkit: Extract from Dicom, Process with Annotation and Select from Radiomic Features

Classification of thyroid diseases from scintigraphy images using a two-step method: thyroid segmentation and disease classification using the extracted radiomics features from the segmented regions.

This project involves liquid biopsy and lung CT imaging for the cancer patients. Target lesions (tumors) are manually segmented by Sharyn and we extracted radiomics features using pyradiomics.

Radiomics features (RFs) extract quantitative information from medical images, towards the derivation of biomarkers for clinical tasks such as diagnosis, prognosis, or treatment response assessment. Different image discretization parameters (e.g. bin number or size), convolutional filters, or multi-modality fusion levels can be used to generate radiomics signatures. Commonly, only one set of parameters is used; resulting in only one value or ‘flavour’ for a given RF. We propose ‘tensor radiomics’ (TR) where tensors of features calculated with multiple combinations of parameters (i.e. flavours) are utilized to optimize the construction of radiomics signatures.

Helpful scripts for radiomics researchers. Collect all the DICOM metadata into .csv and .pkl files which can be used to scrutinize/ inspect your data. Crate an organized DICOM directory from an existing folder. Automatically extract radiomic features from a directory of DICOM files.

Extract radiomics (radiological features) from 3D DICOM images. Complete Pipeline Analysis. For single and batch processing.Using SimpleITK, PyRadiomics and PyDicom Libraries.

Pipeline for extracting of, selection of, machinelearning with radiomics features

Radiomics is a field that involves extracting large amounts of quantitative features from medical images using data-characterization algorithms. These features, known as radiomics features, can be used for various applications such as diagnosing diseases, predicting outcomes, or assessing response to therapy.

This is a MATLAB wrapper pipeline for executing CaPTk on medical images to extract radiomic features and process them.

A full-cycle medical imaging pipeline that extracts and analyzes 2D and 3D radiomic features from CT scans to classify lung nodules. Utilizing the LIDC-IDRI dataset, this project benchmarks multiple feature selection techniques (Lasso, PCA, t-test) and ensemble classifiers (XGBoost, Random Forest) to optimize diagnostic sensitivity.

[Updating] extracting radiomics features from HEST dataset using pyradiomics.

A GUI tool for extracting radiomics features from DICOM images

CT-based deep learning segmentation of ovarian cancer and the stability of the extracted radiomics features

Python scripts for extracting radiomics features from CT images, including shape, texture, wavelet transform, and 2D/3D fractal dimensions.

An automated computer vision and radiomics pipeline to extract texture features from pancreas ultrasound images and predict transplant rejection.

Macro-radiomics : a framework for extracting holistic organ-level biomarkers. Unlike traditional radiomics, which focuses narrowly on focal lesion heterogeneity, Macro-Radiomics encompasses geometric features (e.g., normalized organ volumes, vascular diameters) and global statistical descriptors (e.g., parenchymal density, entropy).

To evaluate the diagnostic efficacy of radiomics features extracted from MR cytometry parameter mappings in differentiating benign and malignant breast tumors.

Radiomics is a field that involves extracting large amounts of quantitative features from medical images using data-characterization algorithms. These features, known as radiomics features, can be used for various applications such as diagnosing diseases, predicting outcomes, or assessing response to therapy.

A python- based pipeline for extracting and analyzing delta-radiomics features from longitudinal PET/CT imAging to predict treatment response in breast cancer

Radiomic analysis and graphing. Takes in DICOM simage, extracts chosen radiomic features, compare different acquistion time and smoothing parameter, then produce heatmap for analysis.

This project implements a radiomics-based pipeline for extracting quantitative features from CT scans and analyzing their association with coronary calcium burden using Agatston scoring.

This has all the codes relevant to my Master's thesis work based on radiomics features extracted from CT Enterography scans of Crohn's disease

This is the code using self-learning based method to extract CT image features and build cox model for outcome prediction on OPC-Radiomics dataset

This is a coursework which aim is to predict grade of meningioma patients from radiomic features extracted from MRI scan

Automated radiomics pipeline for survival prediction in pancreatic ductal adenocarcinoma (PDAC). Extracts 1,316 features from CT images using PyRadiomics, applies elastic net Cox regression, and compares multi-omic models with LOOCV.

After preprocessing and registering the images in Master_Thesis_1 repo, now, we will extract radiomic features and create clusters from it.

This project contains a series of Python scripts for extracting radiomics features from medical imaging data and performing clustering analysis and evaluation. The scripts cover the entire workflow from feature extraction to clustering metric calculation.

This project contains a series of Python scripts for extracting radiomics features from medical imaging data and performing clustering analysis and evaluation. The scripts cover the entire workflow from feature extraction to clustering metric calculation.