A complete pipeline for metagenomic analysis

Installation of SqueezeMeta database and web interface. Refer to https://github.com/jtamames/SqueezeMeta for information on the SqueezeMeta pipeline

SQMxplore complements the SQM environment, adding a user-interface to visualise and explore the results of the SqueezeMeta pipeline and SQMtools package.

:exclamation: This is a read-only mirror of the CRAN R package repository. SQMtools — Analyze Results Generated by the 'SqueezeMeta' Pipeline. Homepage: https://github.com/jtamames/SqueezeMeta Report bugs for this package: https://github.com/jtamames/SqueezeMeta/issues

Singularity recipe files for SqueezeMeta (https://github.com/jtamames/SqueezeMeta)

A singularity definition file for SqueezeMeta https://github.com/jtamames/SqueezeMeta

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GUI Launcher for the SqueezeMeta suite

Here we have run Squeezemeta. After that we extracted the genomes with >50% completeness and <10 contamination.

Tutoriales de metagenómica con datos públicos (QIIME2 y SqueezeMeta)

Taxonomy and prevalence filter pipeline for microbiome datasets adapted to SqueezeMeta_Reads output