Multi-omics analysis of breast and ovarian cancer data from National Cancer Institute's TCGA and CPTAC repositories.

This project implements a distributed streaming pipeline for multi-omics breast cancer data analysis, integrating TCGA, CPTAC genomics and proteomics data for real time processing with Apache Kafka and multi-omics integration for comprehensive cancer analysis

Multi-database analysis of DGAT1 expression and immune microenvironment in glioblastoma (TCGA, CGGA, CPTAC)

Analysis of mutations in new cohorts after TCGA, such as ICGC, CPTAC and GENIE, using the tools developed in the NeST paper

In this analysis, we check if the survival transcriptomic signature in TCGA GBM cohort is also visible in the CPTAC GBM cohort.