A comprehensive Model Context Protocol (MCP) server that provides access to the AlphaFold Protein Structure Database through a rich set of tools and resources for protein structure prediction analysis.

This repository contains a MCP (Model Context Protocol) server that retrieves protein information by searching UniProt for accession numbers based on human protein names, then leverages AlphaFold to provide detailed protein data and direct links to AlphaFold structural predictions.

An MCP server that aggregates structural, chemical, and literature data from UniProt, PDB, AlphaFold, ChEMBL, and PubMed to evaluate druggable pockets before computational protein design.

A comprehensive Model Context Protocol server for accessing AlphaFold Protein Structure Database with advanced protein structure prediction tools

AlphaFold DB MCP Server — pre-computed predicted protein structures for 200M+ proteins (Cloudflare Worker)

AF-CycDesign MCP server for cyclic peptide design with AlphaFold