Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.

A bioinformatics-focused library for numerical modeling, optimisation, and simulation written in Rust

ASimulatoR: splice-aware RNA-seq data simulation https://doi.org/10.1093/bioinformatics/btab142

:leaves: SiNGA (Simulation of Natural Systems using Graph Automata) is an open-source library containing tools especially for structural bioinformatics and systems biology.

A program, intended for the students of computational biology and bioinformatics, which helps its users perform an assisted experiment involving molecular docking simulation techniques.

Bioinformatics projects including protein folding simulations, genome assembly, DNA motif-based regulatory region discovery, and phylogenetic algorithms, Galaxy plug-in for mRNA annotation

A script for simple mendelian genetic simulation. This could be loosely considered my first ever 'bioinformatics' project. Developed in a day for fun as part of my 8th grade science class.

Bioinformatics PCR Simulation Project

Simulation and bioinformatics analysis of selfish mtDNA dynamics

A set of scripts and simulations to generate datasets for the UBC bioinformatics workshop

This repository tracks my progress through the MIT 6.0002 course. It includes problem set write-ups, reflections, and selected code snippets. This course is part of my continued learning in algorithmic problem-solving, optimization, and simulation for bioinformatics and therapeutic development.

Bioinformatic Modelling and Simulation

Examples and tutorials (mainly Jupyter notebooks) for various topics regarding simulations in Bioinformatics or Biophysics.

Homeworks, exercices and practice simulations on VMD and NAMD from the Bioinformatics subject at ESCOM - IPN

Bioinformatics pipeline for muntant simulation and validation of variant calling workflow in resequences of Arabidopsis thaliana

Metagenomic analysis of microbial communities from space and Earth simulations. Employed bioinformatics tools in Linux environment for data processing, taxonomic classification, and antimicrobial resistance identification.

A complete computational drug-repurposing project for PAM. Includes docking, molecular dynamics simulations, and binding energy analysis to identify potential inhibitors against Naegleria fowleri target proteins. Shows my practical skills in bioinformatics and computer-aided drug design.

Cross-correlation filtering code and simulation data for the paper "Efficient Cross-Correlation Filtering of One- and Two-Color Single Molecule Localization Microscopy Data" in Frontiers in Bioinformatics.

Introduction to Genetics & Genetic Engineering – Course Repository This repository contains structured notes, simulations, assignments, and mini-projects covering the foundations and applied aspects of Genetics, Genetic Engineering, Biotechnology, Bioinformatics, and Synthetic Biology. It is designed as a complete learning pathway

The AutoMol Framework is a multi-phase computational pipeline designed for the automated generation, analysis, and testing of novel molecular structures. This system integrates machine learning techniques, molecular dynamics simulations, and bioinformatics tools to create and optimize molecules tailored to specific biological functions.

Genome Oriented Bioinorfmatics is a Seminar covering various Bioinformatics essentials/tools. Main topics include (Exon skipping, bam feature extraction, read simulation, Differential Analysis, GO enrichment) Also includes a Capstone Project labeled Block

SC-sample is a computer simulation tool for modeling spatial coalescent with recombination process, which generates ARGs directly consistent with the given sample. It attempts to uniformly select ARG from the sample-consistent ARG space. The algorithm is modified version of SC. -----------Related Publication: BMC Bioinformatics. 15:273. Link:http://www.biomedcentral.com/1471-2105/15/273

Bioinformatics Simulations

Interactive bioinformatics simulations for ScienceClaw 2026

Bioinformatics Modeling & Simulation

SECB4313-01 BIOINFORMATICS MODELLING AND SIMULATIONS

Bioinformatics Modelling and Simulation

BIOINFORMATICS MODELING AND SIMULATION

Central repository for Bioinformatics Modelling & Simulations projects, facilitating collaborative coding, fostering teamwork, and version tracking for seamless project development.

Bioinformatics Sequence Alignment Simulation project.