Found 502 repositories(showing 30)
MouseLand
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
okunator
Encoder-Decoder Cell and Nuclei segmentation models
an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
MouseLand
napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
stegmaierj
3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
BioImaging-NKI
ImageJ macro for the analysis of foci (e.g. DNA damage) in nuclei/cells
BioImaging-NKI
ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.
True-North-Intelligent-Algorithms
A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.
MunskyGroup
Repository to automatically process Fluorescence In Situ Hybridization (FISH) images using Cellpose and BIG-FISH (FISH-quant v2).
Image-Py
reimplement cellpose without gui
pr4deepr
Google Colab notebook for Cellpose
MercaderLabAnatomy
Automated batch processing of cell and tissue microscopy image data in Napari
trackmate-sc
Tentative Cellpose integration in TrackMate.
AlexHego
No description available
tutorial for running CellPose advanced functions
AllenNeuralDynamics
Large-scale cell segmentation with cellpose.
adiezsanchez
Segmentation of nuclear signals in fluorescently stained mouse brain tissue sections. Segmentations performed with a fine-tuned Stardist 3D model and/or Cellpose
Image-Py
cellpose plugin for imagepy
ksugar
No description available
Image-Analysis-Hub
Fiji plugin to use Cellpose with Appose
Image-Py
transform cellpose hot image to label mask
Image-Py
cellpose on planer framework, light and fast!
Template notebook & instructions to interactively train 3D cellpose models
AjitKumar-git
Adapted from arivis V4D
guiwitz
A plugin to process Imaging Mass Cytometry data with cellpose and steinbock
cameronlab
A finetune of cellpose and accompanying scripts designed for segmenting single and dual channel cyanobacteria movies.
kevinjohncutler
Repo for hosting cellpose models
milesbailey121
A repository for single-cell quantification using mask formats generated by Cellpose! This CLI tool enables the analysis of single-cell data by enabling the quantification of signal intensities and cell-specific features from images and corresponding masks.
ryouchinsa
Cellpose CPP Wrapper for macOS and Ubuntu GPU