COBRApy is a package for constraint-based modeling of metabolic networks.

Python package to study microbial communities using metabolic modeling.

A Python framework for structural systems biology

D3.js based visualizations of cobrapy metabolic models

StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy

A COBRApy extension for genome-scale models of metabolism and expression (ME-models)

Teaching materials for cobrapy, cameo, escher and DD-DeCaF

Python package for building and analyzing models using ModelSEED

An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al

This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and benchmarking scores for reconstructor models. Reconstructor is a COBRApy compatible, automated GENRE building tool from gene fastas based on KEGG annotations.

Mackinac: A bridge between ModelSEED and COBRApy

Gene Inactivation Moderated by Metabolism, Metabolomics, and Expression (COBRApy)

Reaction Inclusion by Parsimony and Transcript Distribution

Constraint-based modeling of metabolism using Mixed Integer Optimization

Constraint-based Metabolic Modeling Course

A tutorial on cobrapy

Dynamic FBA for use with COBRApy metabolic models

Multivariate thermodynamics-based metabolic flux analysis in Python.

scobra - an extension of cobrapy

Python package and workflow for EFM calculation via (mp)lrs and efmtool

Data and tools necessary to construct iJL1678b-ME, a genome-scale model of E. coli K-12 MG1655 metabolism and expression

Using COBRApy to model metabolic networks

CObRaPy tool SEt

Adjusting for false discoveries in constraint- and sampling-based differential metabolic flux analysis

findCP CLI package - find ChokePoint reactions in genome-scale metabolic models

Constraint-based model vulnerabilities analysis - Python analysis tool http://contrabass.unizar.es

Multi-scale model of Metabolism In Cellular Systems

KBase Interface for COBRApy

COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

Notebooks showing basic use of cobrapy