MedicalSeg is an easy-to-use 3D medical image segmentation toolkit that supports the whole segmentation process. Specially, We provide data preprocessing acceleration, high precision model on COVID-19 CT scans dataset and MRISpineSeg spine dataset, and a 3D visualization demo based on itkwidgets.

End-to-end Python CT volume preprocessing pipeline to convert raw DICOMs into clean 3D numpy arrays for ML. From paper Draelos et al. "Machine-Learning-Based Multiple Abnormality Prediction with Large-Scale Chest Computed Tomography Volumes."

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Repository processes CT scanned images of human Lungs , which are in DICOM image format. Visualises the data in 3D and trains a 3D convolution network on the data after preprocessing.

Preprocessing scripts for MRI to CT synthesis.

Preprocessing and analysis for training SNOMED-CT concept embeddings from CORD-19 corpus

Code for preprocessing the LIDC-IDRI lung cancer screening CT scan dataset

The pre-processing code for CT images in DICOM style and segmentation in Nii style.

Preprocessing of Medical CT images for Deep Learning

Jupyter notebooks for preprocessing DICOM medical images across modalities (CT, MRI, X-ray). Streamlines workflows for researchers and clinicians working with medical imaging data.

Depreceated preprocessing scripts for MRI to CT synthesis.

Preprocess head CT scans using python!

The KURIAS-ECG database is a high-quality 12-lead ECG database including standard vocabulary (SNOMED CT, OMOP-CDM). The repository provides preprocessing code and usage code to utilize KURIAS-ECG.

CT and MR scans are used in medical imaging to capture the information of targeted organs. For better diagnosis these two models have to be combined into a single frame. Image fusion is atechnique of generating proficient or interesting information from a set of source images. Fusion method is used to obtain the maximum information with least information lossin a single image. A new fusion method is proposed for medical imaging whereanisotropic diffusion is used to exclude source image into approximation and detail layer. Guided filter is used to preprocess the excluded source images beside with the help of stationary wavelet transform and weighted linear superposition final fused image is obtained. Petrovic metrics are applied to access the execution of the proposed method. The obtainedresults show that purposedmethod outperforms the other state of art method.

DICOM to NIfTI converter for TCIA PSMA-PET-CT-Lesions dataset

In my LUNA16 dataset cancer detection project, I utilized PyTorch to develop and train convolutional neural networks (CNNs) for accurate identification of lung nodules in 3D CT scans. By leveraging advanced deep learning architectures and extensive data preprocessing techniques, the model achieved high precision and recall.

CT-Data Preprocessing

Contains a generic wide beam CT scanner Monte Carlo Source model for FLUKA along with scripts for Preprocessing, Postprocessing and Parallel simulation capability on a HPC

Preprocessing and neural network code to train an adrenal gland segmenter and classifier using contrast CT abdominal imaging.

The Computed Tomography (CT) scanned image of the lungs are preprocessed using image processing techniques like a median filter and Weiner filter, after which a two-level DWT (Discrete Waveform Transform) technology is used to segment, retain, and compress the image. A GLCM (Gray Level Co-occurrence Matrix) is used to extract functions, including entropy, co-relation, strength, variance, and homogeneity from the two-degree DWT images. CNN (Convolution Neural Network) machine learning algorithm is used to classify images. Classification determines whether the image is healthy or cancerous. The proposed system achieved 93% accuracy.

A script for preprocessing CT and X-ray images for training in the X2CT-GAN neural network

Liver Detection Model is preprocessing method for sorting images in CT scan between liver and non-liver

This repository contains the implementation of "Random windowing" and "Window shifting" – a novel preprocessing and augmentation scheme for CT images. Described in the MLSP 2023 paper "View it like a radiologist: Shifted windows for deep learning augmentation of CT images".

Developed a 3D CT analysis pipeline using LUNA16 to study lung nodule candidate detection and explainability in medical AI. Focused on preprocessing, volumetric modeling, uncertainty-aware outputs, and evaluation of Grad-CAM limitations.

CNN model developed using transfer learning to classify the X-CT images. The target is to train the model on learning the attribute of each image based on the amount of porosity that has been measured for each individual image. Images are preprocessed using ImageJ to add essential filters.

Lung Cancer Image Classification is a deep learning project that uses convolutional neural networks (CNNs) to analyze CT scans for early detection of lung cancer. Implemented in a Jupyter notebook, it features data preprocessing, model training, and visualization using the Lung and Colon Cancer Histopathological Image Dataset (LC25000).

Processing of CTA simtel files to hdf5 DL2 files.

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Recommended pre-processing pipeline for CT Brain images prior to machine learning

CT slice preprocessing and 3D mesh generation tool