The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

Plugins for the Ensembl Variant Effect Predictor (VEP)

Reusable and maintained Luigi tasks to incorporate in bioinformatics pipelines

Latest GenePy version using Ensembl VEP annotation, gnomAD random forest flag. Incorporation of tri-allelic variants *in progress*

[DEPRECATED] R Interface to Ensembl Variant Effect Predictor

Deploy an EMR cluster on AWS, with Spark, Hail, Zeppelin and Ensembl VEP using CloudFormation service.

No description available

A repository of pipelines for running the EnsEMBL VEP

A variant annotation tool that parses vcf files and fetches variant information from the Ensembl Variant Effect Predictor (VEP) REST API

Plugin for Jbrowse2 that fetches variant consequences with Ensembl Rest API and helps visualize the possible outcomes of the genome variants.

vepyr (/ˈvaɪpər/) — VEP Yielding Performant Results — a blazing-fast Rust reimplementation of Ensembl's Variant Effect Predictor.

Pipeline para Anotação de Arquivo VCF de Variantes Somáticas utilizando o Ensembl Variant Effect Predictor (VEP) version 105.0 via Google Colab. O SAVEP_v01.2022 é de código aberto e está disponível no GitHub.

A VEP (Ensembl Variant Effect Predictor) app for the DNA Nexus Platform

ENSEMBL VEP on EC2

AWS lambda for Ensembl VEP

A lightweight toolkit to inspect, validate, and manage plugin data for Ensembl Variant Effect Predictor (VEP).

A Haskell script that performs basic parsing on the default output of ensembl-vep and variant-calling format (vcf) files.

A simple example pipeline to filter, annotate, and prioritize rare genetic variants using bcftools and Ensembl VEP. This workflow demonstrates basic variant filtering, rare allele frequency selection, and annotation of functional effects for rare disease research.

VEP environments containerized for singularity

Como utilizar VEP -ensembl 105.0 em um VCF somático

Pipeline Somático - Anotação ensembl-vep

ENSEMBL VEP on EC2

Query EnsEMBL VeP through SNPchiMp

example usage of ensembl vep

A pipeline which uses Ensembl VEP REST API to map input variants to their most severe functional consequence and gene information

No description available

Run VEP with nextflow in https://github.com/mitsuhashi/ensembl-vep

This is a read-only mirror of the git repos at https://bioconductor.org

Unite REST API service for Ensembl VEP tools

Python wrapper and web-server for Ensembl VEP