:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with advanced filters, detailed logs and reports, file integrity checks, NCBI taxonomy and GTDB integration and support for parallel downloads.

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more

A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local sequence data.

A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.

An example GenBank file reader in Rust

Convert genbank, fasta, sbol to JSON and back again!

Convert genbank files to a swath of other formats

:sleeping: :open_file_folder: Create and Query a Local Copy of GenBank in R

An automated pipeline for retrieving orthologous DNA sequences from GenBank in R

A Python interface to gb-io, a fast GenBank parser written in Rust.

Go REST API to replace Genbank, Uniprot, Rhea, and CHEMBL

A Rust library for parsing, writing and manipulating Genbank sequence files

a python package for automated generation of phylogenetic trees from genbank files

Easy-to-use web application for visualization and comparison of genomes in Genbank file

comprehensive dated seed plants made with genbank and opentree

A list of weak Bacterial assemblies in GenBank

Convert a Genbank flat file to an NCBI ptt file

Parse sequence files (GenBank, FASTA, SnapGene, SBOL) and accession IDs (NCBI, iGEM) to a common format

Convert sequence IDs between ucsc/refseq/genbank

GenBank taxonomy processing tools

Munge GenBank files into FASTA and tab-separated metadata

Scripts and instructions for submitting annotated microbial genomes to Genbank

A series of small Biopython scripts for downloading sequence data off NCBI's Genbank.

scripts used to download and analyze insect assemblies from GenBank

Tool to submit viral sequences to Genbank.

building a human pangenome from the HPRCy1v2 genbank accessioned assemblies

Pipeline to create phage genome synteny graphics from genbank files

R interface to GenBank/GenPept files

Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings