Pipeline to make strain specific primers for your strain of interest based on unique orthogroups

Visual story: a primer and home page for interest rates coverage

pipeline to make strain specific primers for your strain of interest

Minimalistic software distribution repo for an example (interest.py) from Chapter 4 in the book A Primer on Scientific Programming with Python, by H. P. Langtangen, Springer, 4th edition, 2015.

This is the interest module copying from "A primer on scientific programming with python 4th". It is served as a first attempt to distribute python module on internet.

A workflow for matching primers against genomes of interest.

Dash app to design primers around a region of interest

Metagenomic sequencing results can guide the design of qPCR primers and probes. This is a pipeline for designing qPCR primers and probes targeting the ARGs of interest based on metagenomic sequencing results and a list of antibiotics of interest.

This application helps you to identify TAC clones in Arabidopsis containing the gene(s) of your interest and design primers for recombineering experiments

A repository for my "Primer" project. A project to make possible the visualization of simulations of my interest. For example: the Granovetter Model for social dynamics.

PrimerFinder is a Python tool that facilitates the design of primers for DNA sequences. Utilizing the primer3 library, this program allows you to import sequences from FASTA files, define fragments of interest, and generate optimal primers according to specified parameters.

Several programs working in a pipeline with Primer3 for finding an optimal set of primers that will cover the sequence of interest by several overlapping PCR-products.

This repo is created for a custom analysis which involves sequencing target sequence which are very short (11-23bp long) being amplified by a set of primers from the system of interest (bacteria culture) and finding the expression level of the sequence of interest.

This MatLab GUI allows for the identification of a TAC clone containing the gene of interest (in Arabidopsis) and to design all the primers needed for a typical tagging and trimming experiment

OTUStalker is a small software tool designed to be compatible with QIIME (v1.8.0). Its purpose is to retrieve data pertinent to a single taxonomic group, from a larger (presumably mixed) data set, therefore allowing the user to concentrate their efforts on the specific taxa of interest. In effect, OTUStalker is taking the place of a targeted PCR primer set. OTUStalker requires a number of output files generated by QIIME (v1.8.0), and creates new files allowing re-analysis of the data set using QIIME.