This repo has metaphlan version 4 with the SGB database and taxonomy can be converted to GTDB

Microbiome Analysis using QIIME2 Humann3 and Metaphlan4

A comprehensive platform for analyzing microbiome data from the LucKi cohort, featuring machine learning models for age group prediction from gut microbiome taxonomic profiles. The platform includes both interactive Streamlit web application and Jupyter notebook-based analysis.

A simple R package to convert MetaPhlAn 4 output profiles to a phyloseq object.

No description available

Sunbeam extension for metaphlan 4 (compatible with sunbeam 4)

Reference-based; HUMAnN3; MetaPhlAn4;GraPhlAn

Simple pipeline for taxonomic profiling of WGS samples using Metaphlan4 on the NBI HPC system

Useful functions ro analyze MetaPhlAn4 output data

No description available

Pipeline for preprocessing microbiome taxonomic profiles (MetaPhlan4)

metaphlan4/humann3.9 pipeline using slurm on HPC

Meta-genomic workshop including Metaphlan4, filterBAM and metaDMG

Integrated 16S + shotgun metagenomics workflow for kvass fermentation (QIIME2, MetaPhlAn4, Kraken2, HUMAnN3, DRAM2) with reproducible outputs.