An extension of the tiffffile package to handle QPTiff data for highly multiplexed microscopy images

Tools for qptiff files

A NextFlow workflow to prepare Vectra mIF qptiff files for the HTAN DCC

Qptiff data model for reading multiresolution multi contrast microscopy data.

Convert from qptiff (and scn?) to ome tiff and remove some metadata.

No description available

Utilizing an input qptiff image for cell detection, cell classification, and distance calculations

Scripts to create an Opal unmixing matrix and applying it to unmixed raw qptiff files. Exporting unmixed images to ome.tiff

Generates masks of spatial coordinates and inserts into a copy of the original .qptiff as independent channels --one for each cell ID class (e.g. cluster, celltype)

Build multiplex image of H-AEC stainings from the following file formats: mrxs, czi (one scene per file) tiff ome.tif qptiff. It needs https://www.openmicroscopy.org/bio-formats/downloads/ and https://github.com/fordanic/openslide-matlab inside the mfiles folder