Information on how to set up RStudio Workbench with SLURM Launcher and Singularity

Run Rstudio server on remote host with SLURM using a SOCKS5 tunnel.

Run Rstudio server in slurm cluster.

This repository hosts all the files necessary to run your Rstudio related environment, with Slurm. This can be quite relevant for frequent Rstudio on Alpine that occasionally will need a lot of cores or memory to run their pipelines

RStudio script for slurm

Rstudio server wrapper scripts for running on a Slurm cluster

Simple Python CLI to start and manage RStudio Server sessions as Slurm jobs through Bioconductor containers

Specialized Docker containers for bioinformatics workflows including Python, R genomic annotation, WGCNA co-expression analysis, RStudio environments, and cfDNA based fragment analysis. Optimized for both Docker and Singularity with HPC-ready SLURM scripts.