Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

The source code and results of performance comparison on the detail of the process among scCATCH, CellAssign, Garnett, SingleR, scMap and CHETAH, and CellMatch database

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:exclamation: This is a read-only mirror of the CRAN R package repository. scCATCH — Single Cell Cluster-Based Annotation Toolkit for Cellular Heterogeneity. Homepage: https://github.com/ZJUFanLab/scCATCH

Problems in streamlining scCatch. I can run it but the results are not displayed

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Single cell data biological analysis includes a primary step that is investigating which type each cell belongs to CIPR (Correlation based method) and ScCATCH (Marker gene method) methods were analysed and numerically compared under different situations.