QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis

Bulked-Segregant Analysis using vcf file with or without parents

DeepBSA is a novel bulked segregant analysis (BSA) software for the dissection of complex traits.

Tutorial for bulk segregant analysis using Python

Scripts used to perform bulk segregant analysis in Brassica napus

Block Regression Mapping (BRM) is a statistical method for QTL mapping based on bulked segregant analysis by deep sequencing

Analysis Pipline Of Bulked Segregant RNA-Seq

Supporting material for book chapter 'Identification of parent-of-origin-dependent QTLs using bulk-segregant sequencing (Bulk-Seq)'

Compare ancestors, clones, and segregant pools and view output on a browser.

This repository stores the codes that run SLiM simulations and plot the graphs for the paper that derives the analytical solution for genomic resolution of Bulk Segregant Analysis (BSA).

Ontology-mediated refinement of bulk segregant analyses

Bulk Segregant Analysis for QTL mapping from pooled whole-genome sequencing data.

Workflow for Analysis of Onion Bulked Segregant Analysis RNASEQ

Custom Script for Bulked Segregant Analysis of pooled sequencing data

BSA - Bulk segregant analysis

Automated BSA pipeline for Cryptosporidium crossing analysis

No description available

Haplotype-based Bulk-segregant analysis

Itasca-C12 Bulk segregant Analysis data

This script is written by my lab member, Jenny. I used this script to determine the cut-off of allele frequency for bulk segregant analysis.

lab manual for MCB160L bulk segregant mapping lab

For simulation various parameters of a Bulked Segregant Analysis population

This repository including scripts for Bulk Segregant Analysis with B.napus

Establishing genotype-phenotype links using Bulk Segregant Analysis of mutations in Plant populations

This project performs bioinformatics analyses for Bulk Segregant Analysis (BSA) to identify genetic variants linked to specific phenotypes.

Data: https://www.ncbi.nlm.nih.gov/sra/SRX025959[accn] Submitted by: University of Michigan Study: Pooled linkage analysis for discovery of Saccharomyces cerevisiae functional mutations by whole genome sequencing Abstract: In order to identify the yeast genes that are mutated in vac6 and vac22 mutants, each mutant strain was backcrossed against a wild-type yeast strain. Phenotypically wild-type and mutant segregants were then pooled and subjected to mate-pair sequencing, i.e. sequencing was applied to one wild-type and one mutant pool for each strain (four libraries in total). The data were mined for mutations evident in the sequence that were present only in the mutant, but not the wild-type, pool for each strain.

QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis

Scripts to help build a pipeline for performing yeast pooled segregant analysis

This is Bulked Segregant Analysis tool for plant species

Scripts for bulked segregant analysis