Found 55 repositories(showing 30)
shenwei356
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
annalam
Toolkit for manipulating FASTA and SAM files
dwpeng
process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED
FlyPythons
Toolkit for processing sequences in FASTA/Q formats
wjwei-handsome
seqkit in rust
yexianingyue
关于seqtk的技巧
ashwini06
test_approach for integrated ChiP-Seq + RNA-Seq analysis
shenwei356
No description available
bio-mcp
📊 MCP server for SeqKit FASTA/FASTQ manipulation
OscarAspelin95
Multi purpose fasta toolkit inspired by SeqKit.
CharlesDexterW
Reproducible Bash pipeline for miRNA precursor analysis using miRBase v22 and SeqKit. Filters by organism and gene target, converts RNA→DNA, and exports GC content and length metrics as TSV and Markdown reports. Configurable via CLI args.
Peter-J-Freeman
Coding examples for the STP Software Engineering
Seraff
Simple wrapper above SeqKit for basic set operators (intersection, subtraction, etc.)
stevenchristian-unr
class seqkit
mutantjoo0
No description available
Picotainers
distroless container for seqkit
YTLogos
No description available
wandercn
No description available
joschlag
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation; bioinf.shenwei.me/seqkit
Balajii44
SRAtoolkit-Seqkit-bwa-bowtie2-samtools-others
shenwei356
fakit was renamed to seqkit
zhaoboqiao
No description available
zhaoboqiao
No description available
pmagwene
No description available
zhaoboqiao
No description available
kbasetest
A docker image for running the seqkit application with the CDM task service
a927050047
evaluate genome using seqkit, murcury, busco, LAI, quartet...
newmanreb
A Python tool for fetching, parsing, and manipulating GenBank transcript records using the Entrez API. Access sequence data with FASTA and GenBank output formatting.
magwenelab
Shell scripts for working with genome sequence data, drawing primarily on the awesome SeqKit toolkit
bwbioinfo
Docker container and cwl definition for seqkit