Demos a Snakemake workflow to classify enhancer regions based on publicly available chromatin marks.

Example Snakefiles for various use cases

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The ENCODE-DCC demo workflow in Snakemake (under development)

Demo repo for new cluster setup with snakemake (excludes configs)

Demonstrate the workflow integration management framework using high dimensional input/output Gaussian Process benchmarking problem

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Reproduce some tables and graphs from Angrist & Krueger (1991)

Demonstrates the use of snakemake compared to GNU make on Uppmax with a simple example

Demo of snakemake/slurm problem

Demonstration Snakemake workflow for Ronin/AWS Slurm-based auto-scaling cluster

demo of a snakemake pipeline

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Demo platform independent snakemake pipelines run on SGE, PBS and K8s

Bioinformatics Pipeline Building meeting - Demo 2018-12-13 on reproducibility using Snakemake and Conda

Oral Treponema WGS (ONT MinION + Illumina HiSeq): legacy records (2015–2020), a verified 2019 run manifest, SOPs, and an updated Snakemake workflow for new projects. Public data linked via NCBI (PRJNA284866). Includes mock manifests for demo/testing. No patient-identifiable data.

snakemake_demo

NeuroDoWo Snakemake Demo

Simple demo of Snakemake

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Introduction to using snakemake for bioinformatics pipelines

First project with snakemake

A set of scripts to illustrate the use of snakemake

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A demo for snakemake exmaple for the bionformatic meeting

Quick demo for Snakemake to present during the Hacky Hour at DPG spring meeting in Erlangen 2022.

Demo repository of a pipeline using Snakemake