Tabix.io UI

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

Project rename TABIX, this repo depreciation see https://tabix.io/doc/ https://github.com/smi2/tabix.ui

Note: tabix and bgzip binaries are now part of the HTSlib project.

:card_index: Retrieve data in genomic intervals with a Python interface for tabix.

GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools

Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R

Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import

C++ wrapper to tabix indexer

Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser

Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).

Docker compose for data analysis

tabix file access with golang using biogo machinery

multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.

[WORK IN PROGRESS]: Pysam2 is a module for Python 3.6 or newer for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib v2 C-API, the same one that powers samtools, bcftools, and tabix.

Tabix reader written 100% in Python

docker-compose for tabix, clickhouse-server and mariadb

No description available

Ruby binding for the tabix file indexing routines within the samtools package http://samtools.sourceforge.net/

Javascript local VCF and Tabix index file parsing and processing

JavaScript BGZF VCF and binary Tabix readers

PYRUS is a plotting tool that uses tabix files to create line graphs from bed file data. Utilization of PYRUS includes having a quick plotter for copy number variation within a given chromosomal range of a referenced bed file.

No description available

interface to tabix using cffi

TabixMate: a companion tool that works with tabix to enable coordinate-data decoupling.

Sample Clickhouse cluster deployment with chproxy

A nodejs-based service for requests for tabix-indexed genomic data

This is *not* the official repository ; this fork is intended to maintain Windows support for tabix (currently via mingw or psyam)

Standard next generation / massively parallel sequencing tools compiled for windows. Includes samtools, bwa and tabix!

Lunaris reads and munges data from block-gzipped, location-sorted, tabix-indexed files on Google Cloud.