Found 22 repositories(showing 22)
nf-core
Assembly and intrahost/low-frequency variant calling for viral samples
sufyazi
Result files generated by nf-core viralrecon pipeline on Nextflow for MOOC FutureLearn
peterk87
Excel report from bioinformatics analysis of viral seq data with nf-core/viralrecon and other Nextflow workflows
paulstretenowich
See the main fork of this repository here >>>
jonbra
Testing the nf-core/viralrecon pipeline
prajaxxx
Documentation of NGS pipeline training with nf-core/viralrecon
zakiSA
Nextflow pipelines
truwl
No description available
rastiks
No description available
ChijiokeUhegwu
This repository contains insights gotten from the analysis of SARS-CoV-2 genomes using the nf-core/viralrecon workflow. It also contains data processed through quality control, alignment, variant calling, and consensus genome generation to support molecular epidemiology and surveillance. Further downstream analysis and visualization were done in R.
Zymo-Research
An adaptation of nfcore-viralrecon
inutano
No description available
nhhaidee
No description available
ds-mhra
Pipeline cloned from viralrecon with amendments to include the lofreq variant caller which can merge results with other available callers after alignment genera tes .bam files.
Seif-el-din
No description available
The Kappa Variant Discovery
No description available
eaderogba
No description available
haggaikelisha-ai
No description available
itika05
Real-time viral genomics pipeline orchestration on AWS using nf-core/viralrecon
doramarcec
Applying viralrecon pipeline to SARS-COV-2 whole-genome sequence analysis and variant calling using Nextflow and Singularity.
biyiemmy
Reproducible SARS-CoV-2 genomic surveillance pipeline using nf-core/viralrecon. Analyzed 5 CDC benchmark samples achieving 99-100% genome coverage. Demonstrates Nextflow, Docker, R/ggplot2, and viral genomics expertise.
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