Test data for vsearch

Scripts and data for evaluation of VSEARCH performance

VSEARCH pipeline for ASV inference of 16S seq data

A Nextflow workflow to run vsearch for short read 16S data

A shell script used to process raw Illumina amplicon data through VSEARCH and QIIME

Prediction of optimal sequence similarity cut-offs for classification and clustering of metabarcoding data using vsearch global alignment and F-measure optimisation as a confidence measure

A vsearch, cutadapt and swarm-based pipeline for metabarcoding data

This is a workflow to carried out a metabarcoding sequencing data analysis with vsearch on unix personnal computer.

USEARCH/VSEARCH-based pipeline for amplicon data processing

An overview of the nessecary steps and programs to analyze 16s paired-end reads.

A shell script used to process raw Illumina amplicon data through VSEARCH and QIIME 1.9.1

Bioinformatics pipelines for ITS fungal metabarcoding using CPU (VSEARCH+Optuna) and GPU (Dorado SUP + Medaka) workflows on Oxford Nanopore data