Integrate EIP and protocol vulnerability checklists into Ralph loop

Refactor Ralph into mode-first codex-only flow with deterministic grading

Initial commit

Enable Zero-Config Audits: Agentic Trigger and Injected Mode support

Bootstrap: Add install_agent.sh for one-click external injection

Docs: Add External Audit Usage Guide

Complete Bootstrap Integration: Refactored Scripts & Imported Skills

Solidify Bootstrap Integration: Complexity Script & Todo Wizard

Integrate Claude Bootstrap: TDD Loops, Dedup, and Review Workflows

Add Claude Code Mastery Guide and default Slash Workflows

Implement Orchestrator Architecture: Subagents Protocol

Implement Flow State Protocol: Safety Hooks + Skip Permissions

Implement Agent Workflows (Slash Commands): Audit, Hound, Verify

Add Meta-Learning Failure Analysis Protocol to AGENTS.md

Add Mutation Testing section to False Positive Prevention Protocol