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Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
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Fixing a syntax issue in utils_model.py that results in an error in 3_train.py (#63)
18e5412View on GitHubFix: image mean and std are computed based on patches, not slides.
448ba01View on GitHubMerge pull request #55 from BMIRDS/compute_stats_feat
6102a69View on GitHubfeat: add function to load stats json file. add counterpart function for saving.
024f462View on GitHubfeat: code is executable in terminal. add a feature to report intermediate stats results.
b3ae4a1View on GitHubdocs: revise the note to include class folders under each data partition.
f82e6feView on GitHubdocs: add notes how to run a model with an existing dataset without going through slide preprocessing.
1e4434eView on GitHubdocs: update required package version. numpy->remove, python->3.7+. add a sub section to describe how to install deps using setup/*.
aa17489View on GitHubfeat: add environment files and bash script for easier setting up.
60ef205View on GitHub