Merge pull request #30 from StefanFlaumberg/main

fix(includes): add missing includes

chore(version): bump version

chore(GeneRaxCore): bump submodule

chore(format): update clang-format

fix(tools): minor changes

chore(tools): rename consensus.cpp -> unrooted_consensus.cpp

Minor refactoring and fix reldating

Merge branch 'pr-20' into main_upstream

chore(version): bump version

chore(GeneRaxCore): bump submodule

Fix multiplication order for better precision

Allow using deprecated option names

Refactor reconciliation models

Fix root origination under the prune mode