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SneakySnake:snake: is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs/1910.09020.
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Merge pull request #2 from TheMightyDuckOfDoom/master
3edfd5dView on GitHubMerge branch 'master' of https://github.com/singagan/SneakySnake
e1e554bView on GitHub