fix(commands): valid YAML frontmatter for sc:agent + skill shim

fix(cli): auto-generate skill shims for all slash commands

docs(readme): explain interactive pipeline checkpoints (Step N/38 menu)

fix(cli): add run-pipeline skill shim for Unknown skill error

docs(readme): add restart step and full end-to-end checklist

docs(proposal): embed full hate speech research plan

feat(research): MCP-first retrieval for Phase 1

docs(mcp): add arxiv, semantic scholar, crossref server configs

feat(pipeline): use RESEARCH_PROPOSAL.md as human input

docs(readme): slim overview, remove dependency SVG

docs(readme): remove redundant init paths

docs(readme): explicit PIPELINE_INPUTS.json example

feat(pipeline): init from PIPELINE_INPUTS.json; fix dependency SVG

docs(repo): add root template, fix diagram text, relocate setup guides

chore(repo): slim root docs and ignore local artifacts