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MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.
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making the bed option compatible with the branching filter
10cbc7dView on GitHubfixing default values for branching filter and updating doc
226ad71View on GitHubimplementing the branching filter to reduce heterozygous site false positives
2d61440View on GitHubmodifying ci simple full test to include small insertions
add8857View on GitHubupdate documentation for small insertions and correct links of compilation badges
86f1a6aView on GitHubminor fixes of small insertions, position of heterozygous and sv type in output vcf
b54e113View on GitHub