feat: Enhance transcript handling and message normalization

fix(bump-version): update path for pyproject.toml to reflect new directory structure

Refactor code structure for improved readability and maintainability

feat(deprecated): update paths and documentation for deprecated Python standalone backend

Add comprehensive tests for thread templates, timeout handling, and upload security

Add shared utility functions, Fuse.js for fuzzy search, and Mermaid.js for diagram rendering

feat(shared-modals): implement native directory picker for thread workspace selection on Windows

feat(thread-workspace): add workspace input and validation for thread creation

feat(cliMeetingContextBuilder): simplify bus_connect instructions in MCP meeting prompt

feat(cliMeetingContextBuilder, cliSessionManager): enhance prompts for thread re-entry and recovery scenarios

feat(cliMeetingContextBuilder): update thread identification to use thread name and improve prompt clarity

feat: bump version to 0.2.29 across all relevant files and improve error handling in shared-agent-status.js

feat: update .gitignore to include pytest and ruff cache directories

feat(codexDirectAdapter): improve error handling for app-server responses and add safe response methods

feat(copilotDirectAdapter): add handling for benign prompt cancellations and improve error reporting