A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
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Rename microbiome_helper2/run_TaxonomyFunctionSearchMegan.pl to microbiome_helper2/MMSeqs2_functional_annotation/run_TaxonomyFunctionSearchMegan.pl
5a7a5ceView on GitHubRename microbiome_helper2/run-mmseqs-jobfiles.sh to microbiome_helper2/MMSeqs2_functional_annotation/run-mmseqs-jobfiles.sh
e4a0657View on GitHubRename microbiome_helper2/pick_uniref_top_hit.py to microbiome_helper2/MMSeqs2_functional_annotation/pick_uniref_top_hit.py
8ed3ddaView on GitHubRename microbiome_helper2/parse_TaxonomyFunction.py to microbiome_helper2/MMSeqs2_functional_annotation/parse_TaxonomyFunction.py
b01f749View on GitHubRename microbiome_helper2/descrip_humann2.py to microbiome_helper2/MMSeqs2_functional_annotation/descrip_humann2.py
4ad938dView on GitHubRename microbiome_helper2/convert_stratifiedRpkm_to_SankeyFormat.py to microbiome_helper2/MMSeqs2_functional_annotation/convert_stratifiedRpkm_to_SankeyFormat.py
01ceff4View on GitHubRename microbiome_helper2/convert_picrust2_to_stratified_output_format.py to microbiome_helper2/MMSeqs2_functional_annotation/convert_picrust2_to_stratified_output_format.py
80759cbView on GitHubRename microbiome_helper2/add_COG_descriptions.py to microbiome_helper2/MMSeqs2_functional_annotation/add_COG_descriptions.py
138a283View on GitHubRename microbiome_helper2/add_6levelsTaxonomy_to_Kraken2Results.py to microbiome_helper2/MMSeqs2_functional_annotation/add_6levelsTaxonomy_to_Kraken2Results.py
cc59e36View on GitHubDelete microbiome_helper2/MMSeqs2_functional_annotation
81e9a3dView on GitHub