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MannLabs/CKG - GitHub Explorer | GitHub Explorer | Trending | Compare

CKG

MannLabs•PUBLIC

Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph

MIT License

Created on Feb 2, 2019

Updated on Mar 29, 2026

Stars

589

Forks

123

Watchers

589

Open Issues

48

Repository Health Score

🧡

57/100

Fair

Overall repository health assessment

Score Breakdown

Activity

Regular updates - updated this month

20/30

67%

Community

589 stars, 123 forks

2/30

7%

Documentation

Has description, wiki, license

20/20

100%

Maintenance

8.1% issue ratio

15/20

75%

Health score is calculated based on activity, community engagement, documentation quality, and maintenance practices

Languages

Jupyter Notebook

99.1%

Python

0.9%

HTML

0.0%

Dockerfile

0.0%

CSS

0.0%

Shell

0.0%

R

0.0%

Issues Analytics

64

Total Issues

All time

33

Open

52% of total

31

Closed

48% of total

3mo

Avg Close Time

Avg response

Issues Activity: Last 6 months

Hottest Issues

1

#83 Import error can't import name 'Markup' from 'jinja2'

10

open

2

#64 Docker couldn't start ckgapp

10

closed

3

#89 Node and edge lists in TSV format

6

2

open

4

#87 Internal server error when logging in http://localhost:8050/

6

2

open

5

#72 CKG Docker Container

8

closed

Dependencies

No package.json found

This might not be a Node.js project

Top Contributors

1

albsantosdel

User

1.1k

commits

2

straussmaximilian

straussmaximilian

User

28

commits

3

dependabot[bot]

dependabot[bot]

Bot

10

commits

4

llniu

User

5

commits

5

hhefzi

User

4

commits

6

caoool

User

1

commits

Recent Commits

Update README with CKG integration details

Maximilian Strauss•6 months ago

6b5b625View on GitHub

Merge pull request #73 from caoool/dependency-fix

Alberto Santos•4 years ago

2f38500View on GitHub

Fixed dependencies that prevent ckgapp from running

caoool•4 years ago

7af7cdaView on GitHub

Updated links to database dump

Alberto Santos•4 years ago

6854c98View on GitHub

Warning docker on MacOS

Alberto Santos•4 years ago

c93387bView on GitHub

Changed version numpy to 1.19.5 for compatibility reasons

Alberto Santos•4 years ago

1eb1986View on GitHub

FIX numpy requirement

Maximilian Strauss•4 years ago

b5a574aView on GitHub

Corrected typo in Dockerfile

Alberto Santos•4 years ago

55903bbView on GitHub

Easy access to installation sections

Alberto Santos•4 years ago

7f9a5f0View on GitHub

Simplified build of Docker image by adding dump file and data folder download

Alberto Santos•4 years ago

cd4c3e4View on GitHub

Keep diseases of interest in protein list annotation

Alberto Santos•4 years ago

a88a4d0View on GitHub

Changed dump file name in Dockerfile

Alberto Santos•4 years ago

1b6e2f2View on GitHub

New links for data and db dump files

Alberto Santos•4 years ago

bf9c256View on GitHub

Added CPTAC GBM re-analysis to notebooks and docs

Alberto Santos•4 years ago

49fde74View on GitHub

Change clinical configuration to use affinity propagation as default when clustering the correlation network

Alberto Santos•4 years ago

00b8419View on GitHub

View all commits