fix: neural map — show labels on all nodes, not just large ones

docs: add CLAUDE.md for Claude Code IDE integration

fix: remove duplicate TOOLS list close bracket breaking MCP server

docs: comprehensive README rewrite

feat: auto-link entities on memory ingest — self-building knowledge graph

feat: brainctl index — browsable knowledge catalog (Karpathy LLM Wiki pattern)

feat: file-anchored memories — tie knowledge to source files

feat: TORMENT-inspired memory lifecycle — query-time decay, dedup, hard cap

Clean internal references — make codebase fully generic

Fix bin/brainctl: resolve symlinks, import from _impl directly

Add agent skill file — teaches any agent how to use brainctl

Remove Anthropic/vendor LLM dependencies — brainctl is model-agnostic

Fix: escape percent in argparse help string (Python 3.14 compat)

Batch API integration — 50% cost reduction for bulk LLM operations

Fix publish workflow: skip-existing prevents failure on manual uploads