Merge pull request #57 from TianGzlab/feat/scrna-doublet-polish

Improve doublet embedding contrast

Polish scRNA doublet detection methods and gallery

Merge pull request #56 from TianGzlab/feat/scrna-clustering-polish

Align scRNA preprocessing and integration parameter guidance

Extend scRNA clustering with PHATE embedding

Strengthen scRNA clustering novice guidance

Refine scRNA clustering parameter mapping

Polish scRNA clustering methods and gallery

Merge pull request #55 from TianGzlab/feat/scrna-wip-recovery

Rename scTenifold skill to in-silico perturbation

Recover scRNA docs and validation assets from WIP backup

Merge pull request #54 from zhou-1314/feat/spatial-raw-processing

feat(spatial): add spatial-raw-processing skill and enhance resolver/registry

Merge pull request #53 from TianGzlab/feat/scrna-runtime-followup