Merge pull request #199 from aertslab/fix_transform_input_memory_usage

Fix memory fragmentation in `_tranform_input`.

Merge pull request #198 from aertslab/202603_bugfixes

Add hydrop paper and update all model citations for consistency

Update preprint links to paper

Remove unused Crested object internal methods leftover after removing deprecated public methods

Move default layout to proper argument in heatmap plotting functions

Merge pull request #140 from aertslab/dev

x_shift test function

Merge main into dev

notebook update

Merge pull request #196 from aertslab/v1.7.1

Add v1.7.1 to changelog

Fix version number in pyproject

Merge pull request #184 - plotting rework and other improvements