Update README.md

update readme

update readme

add __init__ for folder to be recognized as a package

add pyproject, expose dockq command

move scripts to the same folder

move files to separate folder

delete pdf from distribution

delete intermediate artifacts of cosmopolitanization

check in all artifacts of cosmopolitan-ization

reformat dockq with ruff

get file location of binaries from script location rather than from command line

removed CAPRI calculation

removed capri score

removed Capri output