chore: update bd issue tracking state

feat(core): implement NumPy-based LTC/CfC neurons with full test suite

chore(gitignore): ignore tangled requirements.txt

chore: update tangled scripts and bd tracking

feat(deps): add JAX/equinox research dependencies

feat(tracking): add bd issue tracking infrastructure

fix(deps): comment out unavailable scicloj Clojure dependencies

fix: replace pip with uv for faster dependency management

feat: add CI/CD infrastructure and dependency management

feat: add tangled source files and core implementations

fix: comment out problematic Clojure dependencies

feat: add run targets and test infrastructure to Makefile

feat: add comprehensive applications documentation for LNN use cases

docs: add project status badges and draft notice

fix: update COMPREHENSIVE.org formatting and relative paths