Update Figure 5 with the latest SARS-CoV-2 data

Update Figure 5 with latest SARS-CoV-2 data

Update slope on Figure 5

Update Figure 5 (evol rate) with updated SARS-CoV-2 results

Update Figure 5 with latest SARS-CoV-2 trees

Update README.md

add resubmission materials

elevate figs3 to fig6

Update .gitignore to exclude new seasonal flu alignments

update manuscript pdf and add text only doc for resubmission

put genes table in supplement

remove seasonal flu intermediates with alignments

Update .gitignore

update analyses, figs, website with new vic alignment

fix tree prefixes