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ChatSpatial

cafferychen777•PUBLIC

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🧬 Analyze spatial transcriptomics data through natural language conversation. Stop writing code, start having conversations with your data. MCP server for Claude Code and Codex.

agentic-aibioinformaticscell-communicationclaude-desktopcomputational-biologydeconvolution

MIT License

Created on May 6, 2025

Updated on Apr 4, 2026

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🧡

55/100

Fair

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30/30

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Recent Commits

Update MLGenX 2026 badge to oral presentation.

Chen Yang•1 day ago

169cf4eView on GitHub

Separate concepts, examples, and methods reference roles.

Chen Yang•1 week ago

98101f9View on GitHub

Add focused regression tests for trajectory and data prep fixes.

Chen Yang•1 week ago

3f12a34View on GitHub

Rescope docs into a closed navigation loop.

Chen Yang•1 week ago

f9cbeeaView on GitHub

Align package metadata with schema docs.

Chen Yang•1 week ago

e760b5dView on GitHub

Add ENAR 2026 and IBC 2026 oral presentation badges

Chen Yang•2 weeks ago

2926962View on GitHub

Rewrite CONTRIBUTING.md — fix errors, remove redundancy

Chen Yang•2 weeks ago

4d654f1View on GitHub

Add Contributing section to README

Chen Yang•2 weeks ago

35135d1View on GitHub

Add note to cite underlying third-party methods

Chen Yang•2 weeks ago

f147d17View on GitHub

Remove mclust R dependency — GraphST now uses sklearn GaussianMixture

Chen Yang•2 weeks ago

ee771b6View on GitHub

Fix incomplete R methods list in INSTALLATION.md

Chen Yang•3 weeks ago

f1bd472View on GitHub

Update Capabilities table to match actual implementations

Chen Yang•3 weeks ago

3c00775View on GitHub

Add overview figure to README, streamline layout

Chen Yang•3 weeks ago

d6aa274View on GitHub

Add paper badges to README (bioRxiv + MLGenX @ ICLR 2026)

Chen Yang•3 weeks ago

2dd17e2View on GitHub

fix: CellAssign size_factor source alignment, NaN-safe condition comparison, key collision prevention, CellChat input validation, and multi-library SpaGCN warning

Chen Yang•4 weeks ago

645b866View on GitHub

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ChatSpatial

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