Updated the README to briefly describe the filter and local university settings

Be a little more explicit in setting the FoR rule

Explicitly set the encoding to use when reading back the interim files

remove inner double quotes

Enforce TF-8 encoding for all files

Updated to include the affiliation reasoning in the final report CSV.

Fix a few spelling mistakes ;p

Update to write a CSV report

Move old files into Archive.

Add a progress bar + ability to filter the documents to process (using a regex)

Update the prompts to match

Merge branch 'main' of https://github.com/demo-ninjas/AzureOpenAI-ResearchPaperAnalyzer

updated prompts to work with JSON Outputs

Move report to output directory + also allow setting the maximum number of files to process

Remove unneccessary double write to output