MATLAB-based software for analyzing image data from single-molecule pull-down experiments
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Fixed a bug that prevented step counting during initial data processing
ce3b57bView on GitHubUpdate to TIFFStack that maintains backward compatibility while allowing use of built-in tifflib in R2024b+
38dcb11View on GitHubFixed tifflib compatibility in newer versions of MATLAB
243b524View on GitHubAdded some error checking so that tabulateCoAppearance won't crash if no coappearance is detected.
ff822a9View on GitHubAdjust behavior of occupancyBySize.m to show a ratio rather than a percentage.
5a96de1View on GitHubRe-organized data processing code to make step counting more efficient: We now avoid re-loading image data if they are already present.
3435e6cView on GitHubImproved output of number of molecules counted from occupancyBySize.m
9f47faeView on GitHubMerge remote-tracking branch 'refs/remotes/origin/master'
ad666adView on GitHubFixed a bug that sometimes stopped countDynamicBleaching from finding the .mat file.
b50736cView on GitHubAdded new occupancyBySize.m that uses tabulateCoAppearance and plots binding site occupancy in addition to percent co-appearance. Deprecated coApp_vs_Size_pooled.m.
bfb7592View on GitHubAdded new occupancyBySize.m that uses tabulateCoAppearance and plots binding site occupancy in addition to percent co-appearance. Deprecated coApp_vs_Size_pooled.m.
88d96d3View on GitHubFixed a bug that caused TraceInspector to fail when the bait and pray traces were different lengths. Also improved TraceInspector descriptive text.
adcdacdView on GitHubMerge branch 'master' of https://www.github.com/dickinson-lab/SiMPull-Analysis-Software
659d698View on GitHubFixed an issue where MATLAB on a Mac would modify the NDTiff directory, preventing a dataset from being opened more than once.
8467a22View on GitHubFixed a bug that would cause the elapsed time since lysis to be calculated incorrectly if lysis and imaging start occurred in different hours (for example,lsis at 9:59 and imaging start at 10:00). The calculation will still fail if lysis and acquisition occur on different days (with midnight in between) but this should be rare).
bb1a982View on GitHub