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Clinical-Genomics

digo4•PUBLIC

Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline

bcftoolsbowtie2bwa-memcutadaptfastpfastqc

MIT License

Created on Dec 22, 2023

Updated on Feb 24, 2026

Stars

44

Forks

13

Watchers

44

Open Issues

0

Repository Health Score

🧡

50/100

Fair

Overall repository health assessment

Score Breakdown

Activity

Slow updates - updated within 3 months

10/30

33%

freebayes

gatk-bestpractices

gatk-cnv

gatk-joint-variant-calling-workflow

gatk4

gatk4-haplotypecaller

picard

samtools

trimgalore

trimmomatic

varscan

Community

44 stars, 13 forks

0/30

0%

Documentation

Has description, wiki, license

20/20

100%

Maintenance

0.0% issue ratio

20/20

100%

Health score is calculated based on activity, community engagement, documentation quality, and maintenance practices

Languages

Shell

100.0%

Dependencies

No package.json found

This might not be a Node.js project

Top Contributors

1

digo4

User

69

commits

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