update readme

feat(run-agent): multi-directory skill/agent discovery and spec-aligning rename

feat(skills): add spec-alignment skill and document it

feat(orchestrate): add supervisor profile and toml manifest sync

feat(run-agent): streamline run output and log navigation

fix(run-agent): harden config parsing, retry prompts, and defaults

feat(hooks): rewrite OpenCode plugin to use real plugin API

fix(hooks): scope compact scan and remove cli allowlist

refactor(hooks): read sticky skill allowlist from JSON

feat(hooks): support sticky skill allowlist file

refactor(sync): make sync command the only write path

chore(run-agent): increase default timeout to 30 minutes

docs: update orchestrate skill prompt

refactor: sync hooks into harness-local directories

feat: replay sticky skills from transcript with unpin support