A small Python library for working with nucleotide sequences and FASTQ data. It includes two main modules: filter_fastq — filtering of reads by GC composition, length, and average quality (phred33). run_dna_rna_tools is a convenient way to perform basic operations on DNA/RNA (reverse, complement, etc.).
Stars
0
Forks
0
Watchers
0
Open Issues
1
Overall repository health assessment
No package.json found
This might not be a Node.js project
1
commits
Merge pull request #2 from highproteingrenka/my-new-branch
2f9c7eaView on GitHubadd to the script bio_files_processor.py with the parse_blast_output function
dc25d28View on GitHubadd import of new functions, add reading from a file to the filter_fastq function
efdfeceView on GitHubAdd transcribe() for DNA to RNA transcription, reverse() for sequence reversal, complement() for complementary strand generation, reverse_complement() for reverse complementary strands functions to module_2.py
4c44b8bView on GitHubCreate module_2.py with DNA/RNA constants and validation functions
cc3d75bView on GitHubAdd modules/module.py with core sequence analysis functions: calculate_gc() for GC content calculation, calculate_average_quality() for quality scoring, filter_sequence() for sequence filtering logic
a932ae0View on GitHub