Decrease stages in Dockerfile, copy in files as non-root user

Merge pull request #3 from josauder/fix_dependencies

Update version to 1.1.0

Merge branch 'fix_dependencies' of github.com:josauder/mee-deepreefmap into fix_dependencies

Remove need to define /tmp dir in dockerfile, cleanup pyproject, set version to current, update readme

Add get LFS flag in CI

Remove local version extra

Fix imports, use uv instead of poetry, add docker publish in CI

Merge branch 'sharded_reconstruction' into fix_dependencies

Fix Running on CPU with checkpoints trained on GPU

Update dependencies

Add checkpoints

Add sharded reconstruction with h5py and checkpoints in git LFS

Remove Github Action

Reduce layers in Dockerfile, remove CD section from CI pipeline in Github workflow