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Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
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1.6k
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Optional MADV_RANDOM for graphs loaded with mmap (#607)
244100dView on GitHubOptimizations for annotations with dense matches (#606)
83284dbView on GitHubMany query optimizations, parallel queries with one rd traversal (#559)
e69e128View on GitHubupdated sdsl-lite: removed memory overhead in select_support_mcl loaded with mmap (#603)
0afd068View on GitHubServer queries in the multi-graph mode with full loading to RAM (#569)
3520844View on GitHubUpgrade sshash to v5.0.0 with API compatibility changes (#594)
424bcc2View on GitHubInline indexing of suffix ranges in BOSS construction (#590)
06e4862View on GitHubrefactoring and optimizations in annotation queries (#582)
cf7b1dbView on GitHubfix pip packages and run workflow tests on linux (#592)
825fd78View on GitHubupdate WINDOW_SIZE to 60 for count smoothing in TCGA
c3e9683View on GitHubBump pip from 25.2 to 26.0 in /metagraph/api/python (#591)
bda7a53View on GitHubBump wheel from 0.38.1 to 0.46.2 in /metagraph/api/python (#589)
cfb9ea8View on GitHub