Run AlphaGenome on DecodeME GWAS summary statistics files or those from other studies using regenie format
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add requirements file and cache alphagenome results with an option to not filter returned results by tissue type, allowing better subsequent analysis
a3230bbView on GitHubbugfixes for alphagenome selection logic and a few bits
3d407a1View on GitHubmade script flexible and foxed caching bug, added README
ee15f03View on GitHubandded neighbour proxies as well as distance fallback for ld filtering
eb094ccView on GitHubfox for non deterministic ld caching and graceful fallbacks on errors
9b84cabView on GitHubadded ldlink caching and ability to run on subsections of the data, e.g analyze_decodeme.py --chrom 1 --start 173000000 --end 174000000
ebbc28cView on GitHubMerge branch 'main' of github.com:s4mehotblack/AlphaDecode
c7cb902View on GitHubimprovements tomreporting of credible set before calling alphagenome
3545ae4View on GitHuballow reuse of gene sets to save reprocessing, use 95% Credible Set using Approximate Bayes Factors (ABF)
7c50a78View on GitHub