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A small program that glues together other programs allowing a user to input a codon alignment in FASTA format and produce an annotated phylogenetic tree showing which substitutions occurred on a given branch. Originally written for colleagues at the MRC NIMR.
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25
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Add facility to parse PAML results file (rst) directly without running treesub (and so ignoring missing treesub files)
fb17706View on GitHubUse a different method to parse PAML ancestral substitutions
1da6bbeView on GitHub